Fithic github
WebDOI: 10.18129/B9.bioc.FitHiC Confidence estimation for intra-chromosomal contact maps. Bioconductor version: Release (3.16) Fit-Hi-C is a tool for assigning statistical confidence … WebThe PyPI package fithic receives a total of 169 downloads a week. As such, we scored fithic popularity level to be Limited. Based on project statistics from the GitHub …
Fithic github
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Fit-Hi-C (or FitHiC) was initially developed by Ferhat Ay, Timothy Bailey, and William Noble January 19th, 2014. It is currently maintained and updated by Ferhat Ay ([email protected]) and Arya Kaul ([email protected]) at the Ay Labin the La Jolla Institute for Allergy and Immunology. The current version is named as … See more Fit-Hi-C may be installed through one of three ways. 1. Bioconda 2. Github 3. Pip Out of all of the following, we recommend installing through bioconda to automatically install all dependencies. See more A good part of any software installation is being able to run tests on the correct installation of it. See more Congratulations! If you have gotten to this point, then you have a working, fully installed version of Fit-Hi-C running on your computer. Good on you! But that was the easy part, now … See more WebJan 24, 2024 · The GitHub repository already includes test data (under fithic/tests/data), which can be directly used to run FitHiC2 on small …
WebThe file sample_script.sh (provided in GitHub archive) contains the sample script to execute FitHiChIP. The sample command to run FitHiChIP is: bash FitHiChIP_HiCPro.sh -C configuration_file_name. where, FitHiChIP_HiCPro.sh: main executable of FitHiChIP pipeline. In the GitHub archive, four configuration files are provided for users to check: http://noble.gs.washington.edu/proj/fit-hi-c/
WebThe text was updated successfully, but these errors were encountered: WebFit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C. - GitHub - RuyuTan/FitHiC: Fit-Hi-C is a tool for …
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WebSep 17, 2024 · We also apply FitHiC 7, a more lenient method with higher sensitivity, on the in situ Hi-C datasets of GM12878 or K562 cell lines at 5 kb resolution. We then use these two reference sets of Hi-C ... orange with black spotsWebbioconda / packages / fithic 2.0.8 0 Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome architecture assays. orange with a candle inWebThe GitHub repository already includes test data (under fithic/tests/data), which can be directly used to run FitHiC2 on small subsets of human and mouse Hi-C data from Dixon … iphones 32gbWebGitHub Gist: instantly share code, notes, and snippets. iphones 3421720WebFeb 6, 2024 · Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non … orange with clovesWebFeb 1, 2024 · pip install fithic Copy PIP instructions. Latest version. Released: Feb 1, 2024 Hi-C Analysis software created and maintained by the Ay Lab ... Homepage Statistics. GitHub statistics: Stars: Forks: Open issues: Open PRs: View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery. Meta. License: MIT ... iphones 2022WebNov 14, 2024 · Fit-Hi-C is a programming application to compute statistical confidence estimates for Hi-C contact maps to identify significant chromatin contacts. By fitting a monotonically non-increasing spline, Fit-Hi-C captures the relationship between genomic distance and contact probability without any parametric assumption. The spline fit … iphones 3691539